| Function |
Protein Name |
Source |
Accession Number |
Location |
HTH Motif |
GYM Scores |
Alternate |
# motifs |
|
| Id |
Detected |
|
| Transcriptional Control Proteins |
BirA |
Escherichia coli |
73188 |
20 |
HSGEQLGETLGMSRAAINKHIQ |
33 |
BVECBF |
1 |
HSGEQLGETLGMSRAAINKHIQ |
| LacI |
Escherichia coli |
2506562 |
4 |
VTLYDVAEYAGVSYQTVSRVVN |
78 |
P03023 |
1 |
VTLYDVAEYAGVSYQTVSRVVN |
| CytR |
Escherichia coli |
72535 |
10 |
ATMKDVALKAKVSTATVSRALM |
62 |
RPECCT |
1 |
ATMKDVALKAKVSTATVSRALM |
| PurR |
Escherichia coli |
72538 |
2 |
ATIKDVAKRANVSTTTVSHVIN |
77 |
RPECDU |
2 |
ATIKDVAKRANVSTTTVSHVIN |
| RbtR |
Klebsiella aerogenes |
132163 |
4 |
ITIYDLAELSGVSASAVSAILN |
76 |
P07760 |
1 |
ITIYDLAELSGVSASAVSAILN |
| DeoR |
Escherichia coli |
73076 |
22 |
LHLKDAAALLGVSEMTIRRDLN |
83 |
RPECDO |
1 |
LHLKDAAALLGVSEMTIRRDLN |
| AsnC |
Escherichia coli |
73064 |
23 |
TAYAELAKQFGVSPGTIHVRVE |
64 |
QQECE1 |
1 |
TAYAELAKQFGVSPGTIHVRVE |
| TrpR |
Escherichia coli |
73074 |
66 |
MSQRELKNELGAGIATITRGSN |
44 |
RPECW |
1 |
MSQRELKNELGAGIATITRGSN |
| CAP |
Escherichia coli |
1789756 |
168 |
ITRQEIGQIVGCSRETVGRILK |
53 |
AAC76382 |
1 |
ITRQEIGQIVGCSRETVGRILK |
| AraC |
Escherichia coli |
1786251 |
195 |
FDIASVAQHVCLSPSRLSHLFR |
58 |
AAC73175 |
1 |
FDIASVAQHVCLSPSRLSHLFR |
| AraC |
Erwinia carotovora |
78255 |
200 |
LRIDEVARHVCLSPSRLAHLFR |
69 |
A25027 |
1 |
LRIDEVARHVCLSPSRLAHLFR |
| Fnr |
Escherichia coli |
73019 |
195 |
MTRGDIGNYLGLTVETISRLLG |
60 |
RGECF |
1 |
MTRGDIGNYLGLTVETISRLLG |
| Ada |
Escherichia coli |
66479 |
100 |
VTLEALADQVAMSPFHLHRLFK |
67 |
XYECO2 |
1 |
VTLEALADQVAMSPFHLHRLFK |
| DicA |
Escherichia coli |
73095 |
21 |
HTQRSLAKALKISHVSVSQWER |
78 |
BVECDA |
1 |
HTQRSLAKALKISHVSVSQWER |
| DicC |
Escherichia coli |
72932 |
11 |
GSKTKLAQAAGIRLASLYSWKG |
60 |
CEECDC |
1 |
GSKTKLAQAAGIRLASLYSWKG |
| Fis |
Escherichia coli |
145973 |
72 |
GNQTRAALMMGINRGTLRKKLK |
84 |
AAA98812 |
1 |
GNQTRAALMMGINRGTLRKKLK |
| LysR |
Escherichia coli |
73060 |
19 |
GSLTEAAHLLHTSQPTVSRELA |
82 |
RGECK |
1 |
GSLTEAAHLLHTSQPTVSRELA |
| MetR |
Escherichia coli |
96181 |
17 |
GSLAAAAATLHQTQSALSHQFS |
66 |
A36066 |
1 |
GSLAAAAATLHQTQSALSHQFS |
| IlvY |
Escherichia coli |
73068 |
16 |
RHFGRSARAMHVSPSTLSRQIQ |
59 |
RGECIY |
1 |
RHFGRSARAMHVSPSTLSRQIQ |
| AmpR
|
Enterobacter cloacae |
78250 |
21 |
LSFTHAAIELNVTHSAISQHVK |
68 |
A25686 |
1 |
LSFTHAAIELNVTHSAISQHVK |
| TrpI
|
Pseudomonas
aeruginosa |
77686 |
21 |
HSISLAAEELHVTHGAVSRQVR |
56 |
A30769 |
1 |
HSISLAAEELHVTHGAVSRQVR |
| NodD
|
Rhizobium meliloti |
73063 |
24 |
RKLTAAARRINLSQPAMSAAIA |
76 |
ZZZRDM |
1 |
RKLTAAARRINLSQPAMSAAIA |
| NodD2 |
Rhizobium meliloti |
78005 |
21 |
RKLTAAARRVKLSQPAMSAAIA |
76 |
B25788 |
1 |
RKLTAAARRVKLSQPAMSAAIA |
| XylS |
Pseudomonas putida |
77772 |
228 |
ISLERLAELAMMSPRSLYNLFE |
59 |
A24987 |
1 |
ISLERLAELAMMSPRSLYNLFE |
| NifA |
Klebsiella pneumoniae |
73053 |
494 |
WVQAKAARLLGMTPRQVAYRIQ |
59 |
RGKBAP |
1 |
WVQAKAARLLGMTPRQVAYRIQ |
| NifA |
Rhizobium meliloti |
128225 |
511 |
WNQAKAARILEKTPRQVGYALR |
53 |
P03028 |
2 |
WNQAKAARILEKTPRQVGYALR |
| NtrC |
Klebsiella pneumoniae |
128601 |
443 |
GHKQEAARLLGWGRNTLTRKLK |
82 |
P03029 |
2 |
GHKQEAARLLGWGRNTLTRKLK |
| NtrC |
Rhizobium meliloti |
77994 |
450 |
GNQIKAADLLGLNRNTLRKKIR |
92 |
A26934 |
2 |
GNQIKAADLLGLNRNTLRKKIR |
| MerR |
Bacillus sp. |
127011 |
3 |
FRIGELADKCGVNKETIRYYER |
85 |
P22853 |
1 |
FRIGELADKCGVNKETIRYYER |
| MerR |
Staphylococcus aureus |
127015 |
3 |
MKISELAKACDVNKETVRYYER |
73 |
P22874 |
1 |
MKISELAKACDVNKETVRYYER |
| MerR |
Tn21 |
150778 |
8 |
LTIGVFAKAAGVNVETIRFYQR |
77 |
AAA19678 |
2 |
LTIGVFAKAAGVNVETIRFYQR |
| NahR |
pNAH7 |
94931 |
21 |
RRVSITAENLGLTQPAVSNALK |
75 |
A32837 |
1 |
RRVSITAENLGLTQPAVSNALK |
| TrfB
|
RK2 |
125522 |
35 |
KPQATFATSLGLTRGAVSQAVH |
53 |
P03052 |
1 |
KPQATFATSLGLTRGAVSQAVH |
| TetR |
Tn10 |
73100 |
25 |
LTTRKLAQKLGVEQPTLYWHVK |
87 |
RPECTN |
1 |
LTTRKLAQKLGVEQPTLYWHVK |
| TetR |
pSC101
|
150946 |
25 |
LTTRRLAERLGVQQPALYWHFK |
92 |
AAA25677 |
1 |
LTTRRLAERLGVQQPALYWHFK |
| Recombination or Replication
Proteins |
TnpR |
Tn21 |
72976 |
162 |
EQKTKLAREFGISRETLYQYLR |
90 |
RPEC21 |
1 |
EQKTKLAREFGISRETLYQYLR |
| TnpR |
Tn501 |
94819 |
162 |
EPKAQLAREFNISRETLYQYLR |
86 |
S09632 |
1 |
EPKAQLAREFNISRETLYQYLR |
| TnpR |
gd (Tn1000) |
135945 |
159 |
LGASHISKTMNIARSTVYKVIN |
30 |
P03012 |
1 |
LGASHISKTMNIARSTVYKVIN |
| TnpR |
Tn3 |
135947 |
159 |
TGATEIAHQLSIARSTVYKILE |
56 |
P3011 |
1 |
TGATEIAHQLSIARSTVYKILE |
| TnpR |
Tn2501
|
135944 |
168 |
ISISAIAREFNTTRQTILRVKA |
36 |
P05823 |
1 |
ISISAIAREFNTTRQTILRVKA |
| InvP |
Escherichia coliP region |
72978 |
159 |
TPRQKVAIIYDVGVSTLYKRFP |
69 |
JWEC |
1 |
TPRQKVAIIYDVGVSTLYKRFP |
| InvP |
Phage
PI C |
76812 |
159 |
IPRKQVAIIYDVAVSTLYKKFP |
74 |
S07175 |
1 |
IPRKQVAIIYDVAVSTLYKKFP |
| Hin |
Salmonella sp. |
72977 |
160 |
HPRQQLAIIFGIGVSTLYRYFP |
94 |
JWEBT |
1 |
HPRQQLAIIFGIGVSTLYRYFP |
| InsA |
IS1 |
76271 |
64 |
VGCRATARIMGVGLNTIFRHLK |
70 |
IEECB9 |
1 |
VGCRATARIMGVGLNTIFRHLK |
| Nu1 |
Phage l |
215105 |
3 |
VNKKQLADIFGASIRTIQNWQE |
59 |
AAA96533 |
1 |
VNKKQLADIFGASIRTIQNWQE |
| B |
Phage Mu |
76119 |
19 |
TTFKQIALESGLSTGTISSFIN |
66 |
ZBBPU2 |
2 |
TTFKQIALESGLSTGTISSFIN |
| Phage Transcritional Control
Proteins |
Cro |
Phage l |
73101 |
14 |
FGQTKTAKDLGVYQSAINKAIH |
70 |
RCBPL |
1 |
FGQTKTAKDLGVYQSAINKAIH |
| cI |
Phage l |
215147 |
32 |
LSQESVADKMGMGQSGVGALFN |
57 |
AAA96581 |
1 |
LSQESVADKMGMGQSGVGALFN |
| cII |
Phage l |
73106 |
24 |
LGTEKTAEAVGVDKSQISRWKR |
75 |
QCBP2L |
1 |
LGTEKTAEAVGVDKSQISRWKR |
| c1 |
Phage 434 |
224174 |
16 |
LNQAELAQKVGTTQQSIEQLEN |
69 |
1011238A |
1 |
LNQAELAQKVGTTQQSIEQLEN |
| Cro |
Phage 434 |
73091 |
17 |
MTQTELATKAGVKQQSIQLIEA |
74 |
RCBP4 |
1 |
MTQTELATKAGVKQQSIQLIEA |
| C2 |
Phage P22 |
73090 |
19 |
IRQAALGKMVGVSNVAISQWER |
71 |
RPBP22 |
1 |
IRQAALGKMVGVSNVAISQWER |
| c1 |
Phage P22 |
73105 |
24 |
RGQRKVADALGINESQISRWKG |
96 |
Z1BPC2 |
1 |
RGQRKVADALGINESQISRWKG |
| Cro |
Phage P22 |
73102 |
11 |
GTQRAVAKALGISDAAVSQWKE |
93 |
RGBP22 |
1 |
GTQRAVAKALGISDAAVSQWKE |
| CI |
Phage
ø80 |
540747 |
17 |
LKQRDLAEALSTSPQTVNNWIK |
92 |
S04828 |
1 |
LKQRDLAEALSTSPQTVNNWIK |
| gene 30 |
Phage
ø80 |
540743 |
21 |
GSQKVLAEKVGVTPQAINMLKK |
92 |
S04829 |
1 |
GSQKVLAEKVGVTPQAINMLKK |
| ORF C |
Phage 16-3 |
225830 |
24 |
ITQAELARRVGQSQQAINNLFA |
99 |
1314257A |
1 |
ITQAELARRVGQSQQAINNLFA |
| Repressor |
Phage
ø105 |
75994 |
19 |
LTQVQLAEKANLSRSYLADIER |
72 |
RPBPF5 |
2 |
LTQVQLAEKANLSRSYLADIER |
| C |
Phage P2 |
133374 |
18 |
LSRQQLADLTGVPYGTLSYYES |
78 |
P04132 |
1 |
LSRQQLADLTGVPYGTLSYYES |
| Cox |
Phage P2 |
137589 |
12 |
IPYQEFAKLIGKSTGAVRRMID |
55 |
P07695 |
1 |
IPYQEFAKLIGKSTGAVRRMID |
| APL |
Phage 186 |
137450 |
15 |
VTLQQFAELEGVSERTAYRWTT |
77 |
P21681 |
1 |
VTLQQFAELEGVSERTAYRWTT |
| Ner |
Phage Mu |
2144762 |
24 |
LSLSALSRQFGYAPTTLANALE |
38 |
DNBPNU |
1 |
LSLSALSRQFGYAPTTLANALE |
| C |
Phage Mu |
76121 |
98 |
RNMEELRRQYRLSQPQIYQIIA |
55 |
ZCBPU2 |
1 |
RNMEELRRQYRLSQPQIYQIIA |
| Ner |
Phage
D108 |
70840 |
26 |
MSLAELGRSNHLSSSTLKNALD |
34 |
DNBPD8 |
2 |
MSLAELGRSNHLSSSTLKNALD |
| RNA Polymmerase Sigma Factors |
RpoD |
Escherichia coli |
1072030 |
561 |
HTLEEVGKQFDVTRERIRQIEA |
62 |
AAB60181 |
2 |
HTLEEVGKQFDVTRERIRQIEA |
| RpoH |
Escherichia coli |
1789871 |
251 |
STLQELADRYGVSAERVRQLEK |
80 |
AAC76486 |
2 |
STLQELADRYGVSAERVRQLEK |
| RpoD |
Bacillus subtilis |
2634967 |
330 |
RTLEEVGKVFGVTRERIRQIEA |
72 |
CAB14463 |
2 |
RTLEEVGKVFGVTRERIRQIEA |
| SpoIIAC |
Bacillus subtilis |
1304000 |
219 |
QTQSEVAERLGISQVQVSRLEK |
88 |
BAA12655 |
2 |
QTQSEVAERLGISQVQVSRLEK |
| SigB |
Bacillus subtilis |
133469 |
222 |
KSQKETGDILGISQMHVSRLQR |
55 |
P06574 |
2 |
KSQKETGDILGISQMHVSRLQR |
| SpoIIG |
Bacillus subtilis |
224259 |
204 |
KTQKDVADMMGISQSYISRLEK |
85 |
1012299A |
1 |
KTQKDVADMMGISQSYISRLEK |
| NtrA |
Klebsiella pneumoniae |
78979 |
365 |
MVLADIAQAVEMHESTISRVTT |
67 |
A24115 |
2 |
MVLADIAQAVEMHESTISRVTT |
| NtrA |
Rhizobium meliloti |
95222 |
393 |
LNLRTVADAIKMHESTVSRVTS |
72 |
A33966 |
2 |
LNLRTVADAIKMHESTVSRVTS |
| NtrA |
Azotobacter vinelandii |
77882 |
390 |
LVLHDIAEAVGMHESTISRVTT |
82 |
S00720 |
2 |
LVLHDIAEAVGMHESTISRVTT |
| Replication or Chromosome
Partition Proteins |
Initiation Prot |
R6K |
418716 |
57 |
IRAEDLAALAKITPSLAYRQLK |
54 |
IDECRK |
1 |
IRAEDLAALAKITPSLAYRQLK |
| ParB |
Phage P1 |
73187 |
166 |
MSQKDIAAKEGLSQAKVTRALQ |
61 |
BVECPB |
1 |
MSQKDIAAKEGLSQAKVTRALQ |
| D |
pMini-F |
78383 |
161 |
TGRTEKARIWEVTDRTVRTWIG |
52 |
A24716 |
1 |
TGRTEKARIWEVTDRTVRTWIG |
| SopB |
Phage F |
421170 |
177 |
GNISALADAENISRKIITRCIN |
40 |
S28096 |
1 |
GNISALADAENISRKIITRCIN |
| Eukaryotic Homeobox Proteins |
Prd |
Drosophila
melanogaster |
85138 |
241 |
YTREELAQRTNLTEARIQVWFS |
73 |
A26062 |
1 |
YTREELAQRTNLTEARIQVWFS |
| Eve |
Drosophila
melanogaster |
157387 |
98 |
PRRCELAAQLNLPESTIKVWFQ |
86 |
AAA28522 |
1 |
PRRCELAAQLNLPESTIKVWFQ |
| En |
Drosophila
melanogaster |
123358 |
482 |
RRRQQLSSELGLNEAQIKIWFQ |
67 |
P02836 |
1 |
RRRQQLSSELGLNEAQIKIWFQ |
| Zen1 |
Drosophila
melanogaster |
280613 |
118 |
TRRIEIAQRLSLCERQVKIWFQ |
81 |
A43697 |
1 |
TRRIEIAQRLSLCERQVKIWFQ |
| Antp |
Drosophila
melanogaster |
1805742 |
325 |
RRRIEIAHALCLTERQIKIWFQ |
90 |
CAA27417 |
1 |
RRRIEIAHALCLTERQIKIWFQ |
| MAT a1 |
Saccharomyces cerevisiae |
69396 |
98 |
KEKEEVAKKCGITPLQVRVWFI |
68 |
JEBY1 |
1 |
KEKEEVAKKCGITPLQVRVWFI |
| Pi |
Schizosaccharomyces pombe |
82813 |
134 |
SEFYDLSAATGLTRTQLRNWFS |
40 |
S00556 |
1 |
SEFYDLSAATGLTRTQLRNWFS |
| PHO2 |
Saccharomyces cerevisiae |
82888 |
105 |
VERKKISDLIGMPEKNVRIWFQ |
50 |
A25872 |
1 |
VERKKISDLIGMPEKNVRIWFQ |
| Oct-1 P |
Homo Sapiens |
539651 |
430 |
EEITMIADQLNMEKEVIRVWFC |
67 |
A47001 |
2 |
EEITMIADQLNMEKEVIRVWFC |
| Unc-86 |
Caenorhabditis
elegans |
84475 |
391 |
ERIASIADRLDLKKNVVRVWFC |
64 |
A30042 |
1 |
ERIASIADRLDLKKNVVRVWFC |
| Rat Pit-1 |
Rattus norvegicus |
285136 |
268 |
QEIMRMAEELNLEKEVVRVWFC |
72 |
S22705 |
1 |
QEIMRMAEELNLEKEVVRVWFC |
|
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