Subject: Re: TIR and nonTIR sequences
   From: "David N. Kuhn" <dkuhn@saa.ars.usda.gov>
     To: Giri Narasimhan <giri@cs.fiu.edu>
   Date: Fri, May 24, 2002 11:26 am

Giri,
    The accession numbers for the TIR sequences that I used to generate
the BLAST search were:
a54810 (N from Nicotianum tabacum)
aaa91022 (L6 from Linum ussissitatum)
aac72979  (Rpp1-Wsc from Arabidopsis thaliana)

nonTIR
aad47197  (Rp1 from Zea mays)
aad27815  (I2C from Lycopersicon esculentum)
aaa21874  (Rps2 from A. thaliana)

The sequences are complete genes, not fragments.  I am interested in
finding any conserved regions for TIR and nonTIR genes.  The conserved
regions don't have to be in the NBS (nucleotide binding site).

Thanks,

David

--
David N. Kuhn
Associate Professor
Department of Biological Sciences
Florida International University
Miami, FL 33199

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