Useful Bioinformatics URLs

• PROSPECT is software for Protein Threading. It is written by a group from ORNL.
• List of software available for SVMs; Also see List of applications of SVMs.
• Practical Database Searching, by Stephen Brenner
• Protein Sequence Alignment and Database Scanning, by Geoffrey Barton, 1996.
• Protein sequence alignment techniques, by Geoffrey Barton, 1998.
• Multi-threaded version of ClustalW, by Ognen Duzlevski, U Saskatchewan, 2002.
• Migrate & LAMARC, by Peter Beerli, U Washington. These programs perform maximum likelihood analysis with metropolis algorithm using random coalescence. Migrate also has a parallel version that can be exectuted in an MPI environment.

• IEEE Computer Society Bioinformatics Conference, Stanford University, Palo Alto, CA, August 14 - 16, 2002