# Metagenomics analysis pipeline: Early
Prefix data/Early
Plugin Mothur inputfile Early.mothur outputfile none
Plugin CountTableProcessing inputfile Early.unique_list.0.03 outputfile abund.csv
Plugin CSVNormalize inputfile abund.csv outputfile abundN.csv
Plugin Correlation inputfile abundN.csv outputfile corr.csv
Plugin CSVPad inputfile corr.csv outputfile corrP.csv
Plugin ATria inputfile corrP.csv  outputfile corrP.ATria.noa
Plugin CSV2GML inputfile corrP.csv outputfile corrP.gml
Plugin Cytoscape inputfile corrP.gml outputfile none
