Dr. Giri Narasimhan

Recent Software Packages and Database:

• PseudoNEXUS, Michael Robinson, Camilo Valdes, and Giri Narasimhan, March 2008.
  Integrated genomic database for 5 strains of the bacterium, Pseudomonas aeruginosa.
• DePiCt 1.0, Xintao Wei and Giri Narasimhan, February 2003. BioPerl software to design degenerate primers for large sets of aligned proteins.
• TEIRESIAS, Chengjun Zhan, Na Zhao, Giri Narasimhan, December 2002, Basic C++ implmentation of TEIRESIAS algorithm of Rigoutsos et al.
• ProteinAlign, Gaolin Zheng and Giri Narasimhan, October 2002. Download MatLab code. MATLAB software to align two protein molecules.
• m-MP, Gaolin Zheng and Giri Narasimhan, Nov 2001. Java software to analyze replicate microarray data.
• BIP, Zhou Ji, Qichang Li, Kalai Mathee, and Giri Narasimhan. C++ software to analyze biofilm images.
• GYM, Yuan Gao, Xuning Wang, Kalai Mathee and Giri Narasimhan.
• GYM Version 2.0, Changsong Bu, Kalai Mathee, and Giri Narasimhan, Updated Jan 2003 Latest Web version of software for detection of helix-turn-helix motifs in protein sequences.
• GeoMST, Giri Narasimhan and Martin Zachariasen, 2001, C++ software for computing geometric minimum spanning trees using well-separated pair decompositions.