Program 2  : pgm2Gcgs3767OS 
Class      : CGS3767 Operating Systems
Instructor : Michael Robinson
e-mail     : michael.robinson@cs.fiu.edu 


Worth 10 points


For this assignment you can use your own laptop or the buffalo server
provided by FIU. ALL WORK TO BE SUBMITTED IN CLASS OR THE LAB

*** WORK DONE AT REMOTE LOCATIONS WILL NOT BE ACCEPTED ***
*** All the following tasks MUST be done using Linux terminal commands as learned in class.***
*** DO NOT USE EDITORS OR IDEs, TERMINAL MODE COMMANDS TO BE USED ONLY ***

 a - Go into your virtual machine and load up Ubuntu
 b - Create a folder called : program2
 c - Move to your program2 folder
 d - Download into the program2 folder this file:
     http://users.cis.fiu.edu/~mrobi002/downloads/HumanGenome/VenterGraig/VGuncompressed/hs_alt_HuRef_chr10.fa     
 e - Create a linux Script file called yourLastNameFirstNameInitialPgm2.sh
     Change access rigths as follows: chmod 755 yourLastNameFirstNameInitialPgm2.sh
     In this file create the commands that will do the following:
 f - In the first line of the file yourLastNameFirstNameInitialPgm2.sh write: #!/bin/bash
 g - Using line comments write the command to download the file in question "d"

 h - Using block comments add to your *.sh file, the following documentation:
        *********************************************************************
        Author    : Your Name  
        Course    : CGS 3767 days and time
        Program # : 2
        Due Date  : MM/DD/YYYY 

        Certification: 
        I hereby certify that this work is my own and none of it is the work of any other person. 
 
        *********************************************************************

 i - Write the name of the file downloaded in question "d", with all its atributes,
     into a new file called stats.txt in the same directory where your *.sh program is located.
 j - Change access rigths as follows: chmod 755 yourLastNameFirstNameInitialPgm2.sh
 k - Write the name of your *.sh file with all its atributes into the stats.txt file
 l - Display program two Starting
 m - Create a directory called data in your current directory
 n - Find out how many words, lines/rows/records, and how many bytes are in the hs_alt_HuRef_chr10.fa file
     writing that information into a new file called Counts.txt to be located inside the data folder.
 o - Display the first 5 lines of the Counts.txt file
 p   Write the first 5 lines of the Counts.txt file to a new file named newFile.txt, in the current directory
 q - Using the cat command merge the following files: Counts.txt, hs_alt_HuRef_chr10.fa, newFile.txt
     into a new file called merged.txt in the data folder.
 r - Write all records in the hs_alt_HuRef_chr10.fa file that contain the word TAT in a new file named tatAmts.txt
     in the current directory.
 s - Count the amount of substrings TTT in the tatAmts.txt file, and merge totals to the merged.txt file
 t - Display the first 3 lines of the file merged.txt
 u - Display the last  3 lines of the file merged.txt
 w - Display program two ended