Program 2  : pgm2_6aCGS3767OS 
  Class      : CGS3767 Operating Systems
  Instructor : Michael Robinson
  e-mail     : michael.robinson@cs.fiu.edu 


  Worth 5 points


  For this assignment you can use your own laptop or the buffalo server
  provided by FIU. ALL WORK TO BE SUBMITTED IN CLASS OR THE LAB

  **************************************************************************
  *   WORK DONE AT REMOTE LOCATIONS WILL NOT BE ACCEPTED                   *
  *   DO NOT USE EDITORS OR IDEs, TERMINAL MODE COMMANDS TO BE USED ONLY   *
  **************************************************************************
  
  a - Log into your Ubuntu virtual machine 

  b - Create a folder called : program2

  c - Move to your program2 folder

  d - Download into the program2 folder the following file:
      http://users.cis.fiu.edu/~mrobi002/downloads/HumanGenome/VenterGraig/VGuncompressed/hs_alt_HuRef_chr10.fa

  e - Create a Linux Script file called yourLastNameFirstNameInitialPgm2.sh
  
  f - Change the access rigths of for your *.sh file to rwx 
  

      Using terminal mode ONLY, insert into your *.sh file the commands that will do the following:
     
  g - Insert two empty lines

  h - Using line COMMENTS write the command to download the file in question "d"
 
  i - Insert one empty line
 
  j - Using block COMMENTS add the following documentation to your *.sh file:
        *********************************************************************
        Author    : Your Name  
        Course    : CGS 3767 days and time
        Program # : 2
        Due Date  : MM/DD/YYYY 

        Certification: 
        I hereby certify that this work is my own and none of it is the work of any other person. 
     
        *********************************************************************
   
  k - Insert one empty line
        
  l - In the same directory where your *.sh file is located, write the name of the file downloaded 
      in question "d" with all its atributes, into a new file called pgm2stats.doc

  m - Write the name of your *.sh file with all its atributes into the pgm2stats.doc file
 
  n - In your sh file display "program two Starting"

  o - Create a directory called data in your current directory

  p - Find out how many words, records, and bytes are in the hs_alt_HuRef_chr10.fa file
      writing that information into a new file called Counting.dna to be located inside the data folder.

  q   In the current directory write the first 5 lines of the Counting.dna file to a new file named
      TheNewFile.prn 
 
  r - Merge the following files: TheNewFile.prn, Counting.dna and hs_alt_HuRef_chr10.fa
      into a new file called merging.dat located in the data folder.

  s - Write all records in the hs_alt_HuRef_chr10.fa file that contain the word GACT in a new file 
      named gactAmts.dna in the current directory.

  t - Count the amount of "TT" substrings found in the gactAmts.dna file, 
      and merge the count WITH LABELS into the merging.dat file

  u - Display the first 5 lines of the file merging.dat

  v - Display 2 empty lines

  w - Display the last 6 lines of the file merging.dat

  x - Display program two ended